Private observatory · public notes
PERRYResearch Galaxy
Biology · Computation · Curiosity
在生命、计算与未知之间持续探索。
Observe · Think · Build
01 / EXPLORE
Explore the Galaxy
这里记录生信、深度学习与日常思考。沿着主题找到想读的下一篇。
CURATED / START HERE
A reading compass
编辑精选的基础文章。与按发表时间排列的最新文章分开，随时从这里开始。
02 / LATEST NOTES
Latest Notes
论文阅读、方法分享、编程经验与日常思考，按时间缓慢积累。
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论文题名： Dissecting the cis-regulatory syntax of transcription initiation with deep learning
期刊与年份： bioRxiv，2024。论文原文。
阅读版本： bioRxiv, 2 ...
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论文题名： ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence sy ...
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论文题名： Fine-tuning sequence-to-expression models on personal genome and transcriptome data
期刊与年份： Genome Biology，2026。论文原文。
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论文题名： Systematic contextual biases in SegmentNT potentially relevant to other nucleotide transformer models
期刊与年份： Nucleic Acids Res ...
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论文题名： Personal transcriptome variation is poorly explained by current genomic deep learning models
期刊与年份： Nature Genetics，2023。论文原文。 ...
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论文题名： Benchmarking of deep neural networks for predicting personal gene expression from DNA sequence highlights shortcomings
期刊与年份： ...
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论文题名： Predictable and precise template-free CRISPR editing of pathogenic variants
期刊与年份： Nature，2018。论文原文。
范围为正文全部编号主图及其子图，包含流程示意图。E ...
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论文题名： Determinants of Base Editing Outcomes from Target Library Analysis and Machine Learning
期刊与年份： Cell，2020。论文原文。
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论文题名： Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo
期刊与年份： Nature，2024。论文原文。
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论文题名： DeepC: predicting 3D genome folding using megabase-scale transfer learning
期刊与年份： Nature Methods，2020。论文原文。
阅读版本： Europe PMC 作 ...
03 / TOPICS
Knowledge Constellations
一张只指向公开内容的星图：生命、计算、阅读、方法与好奇心。
01
Open the topic index ↗
Biology
生命科学知识、公开论文与通用概念
↗ 02Computation
Python · R · Linux · Data
↗ 03Artificial Intelligence
模型、工具与学习过程中的思考
↗ 04Papers
论文阅读、证据链与写作笔记
↗ 05Methods
公开、通用、可复现的方法与教程
↗ 06Notes & Life
学习记录、科研生活与日常思考
↗04 / ABOUT PERRY
Somewhere between biology and computation.
一个喜欢生命科学、计算、人工智能与探索未知的研究者。这里记录学习、技术与思考。
About Perry ↗